Dynamic programming which is widely used in sequence alignment can also be used to detect
colinearity between/within chromosome(s). ColinearScan is a free software package distributed
under GNU Public Licence v2 on a statistical model for colinearity prediction.
The current version is ColinearScan 1.0.1 (2006 Jan 25).
All distributions below come with user documentation (plain text). Please see the
file INSTALL for installation instructions.
ColinearScan should build cleanly on UNIX platform. The package has been tested on
Linux AMD64 and
Solaris Sparc. The code is standard
ANSI C++ and PERL.
Email us, if you find any bugs. Please give us
detailed information so that we can reproduce